makeFeaturesList: create a features list from snakePipes ChIP pipeline
In AdrijaK/omicsWrappers: wrapper functions for integrating and visualising ChIPseq, ATACseq, Hi-C, pcHi-C and RNAseq data
Description
Usage
Arguments
Value
Examples
View source: R/makeFeaturesList.R
Description
create a features list from snakePipes ChIP pipeline
Usage
1
makeFeaturesList(snakePipesOutputDir)
Arguments
snakePipesOutputDir
(string) name of snakePipes ChIP pipeline output, for example '$PWD/DNA-mapping/CSAW_MACS2_sampleSheetName'
Value
GRangesList object with list items named as peaks_none, peaks_up, peaks_down
Examples
1
2
snakeDir = "/localhome/bric/qlr900/analysis/02_MLL/data/chip-seq/DNA-mapping/CSAW2_MACS2_H3K27ac"
makeFeaturesList(snakeDir)
AdrijaK/omicsWrappers documentation built on July 22, 2020, 2:11 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/makeFeaturesList.R
Description
create a features list from snakePipes ChIP pipeline
Usage
1 | makeFeaturesList(snakePipesOutputDir)
|
Arguments
snakePipesOutputDir |
(string) name of snakePipes ChIP pipeline output, for example '$PWD/DNA-mapping/CSAW_MACS2_sampleSheetName' |
Value
GRangesList object with list items named as peaks_none, peaks_up, peaks_down
Examples
1 2 | snakeDir = "/localhome/bric/qlr900/analysis/02_MLL/data/chip-seq/DNA-mapping/CSAW2_MACS2_H3K27ac"
makeFeaturesList(snakeDir)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.