countChIPPeaksInPromoters: countChIPPeaksInPromoters count ChIP peaks in promoters of...
In AdrijaK/omicsWrappers: wrapper functions for integrating and visualising ChIPseq, ATACseq, Hi-C, pcHi-C and RNAseq data
Description
Usage
Arguments
Value
View source: R/countChIPPeaksInPromoters.R
Description
countChIPPeaksInPromoters
count ChIP peaks in promoters of given coordinates.
Usage
1
countChIPPeaksInPromoters(pathToSnakePipesDir, GRangesObject, titleString)
Arguments
pathToSnakePipesDir
(string) path to snakePipes Chip output directory (for example CSAW_Gencode_ATAC or CSAW_MACS2_ATAC)
GRangesObject
the genomic ranges (such as expressed gene promoters coordinates) around which to count the ChIP peaks
titleString
the title for title
Value
ggplot barplot object with overlap counts where x axis has ChIP peaks class, y axis contains the promoter count and colors depict the gene regulation group.
AdrijaK/omicsWrappers documentation built on July 22, 2020, 2:11 p.m.
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Description Usage Arguments Value
View source: R/countChIPPeaksInPromoters.R
Description
countChIPPeaksInPromoters count ChIP peaks in promoters of given coordinates.
Usage
1 | countChIPPeaksInPromoters(pathToSnakePipesDir, GRangesObject, titleString)
|
Arguments
pathToSnakePipesDir |
(string) path to snakePipes Chip output directory (for example CSAW_Gencode_ATAC or CSAW_MACS2_ATAC) |
GRangesObject |
the genomic ranges (such as expressed gene promoters coordinates) around which to count the ChIP peaks |
titleString |
the title for title |
Value
ggplot barplot object with overlap counts where x axis has ChIP peaks class, y axis contains the promoter count and colors depict the gene regulation group.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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