nf_tximport: Import counts from nf-core/rnaseq pipeline using tximport
In AlexanderKirchmair/datamisc: Various functions for data handling
View source: R/rnaseq_functions.R
nf_tximport R Documentation
Import counts from nf-core/rnaseq pipeline using tximport
Description
Import counts from nf-core/rnaseq pipeline using tximport
Usage
nf_tximport(
nfdir,
samplesheet = NULL,
subdir = "star_salmon",
pattern = "quant.sf",
tx2gene = "tx2gene.tsv",
type = "salmon",
gene = "SYMBOL",
...
)
Arguments
nfdir
results directory
samplesheet
samplesheet data frame
subdir
star_salmon
pattern
quant.sf (salmon output)
tx2gene
tx2gene.tsv (salmon output)
...
AlexanderKirchmair/datamisc documentation built on June 13, 2025, 5:26 a.m.
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View source: R/rnaseq_functions.R
| nf_tximport | R Documentation |
Import counts from nf-core/rnaseq pipeline using tximport
Description
Import counts from nf-core/rnaseq pipeline using tximport
Usage
nf_tximport(
nfdir,
samplesheet = NULL,
subdir = "star_salmon",
pattern = "quant.sf",
tx2gene = "tx2gene.tsv",
type = "salmon",
gene = "SYMBOL",
...
)
Arguments
nfdir |
results directory |
samplesheet |
samplesheet data frame |
subdir |
star_salmon |
pattern |
quant.sf (salmon output) |
tx2gene |
tx2gene.tsv (salmon output) |
... |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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