runGSEA: GSEA with clusterProfiler
In AlexanderKirchmair/datamisc: Various functions for data handling
runGSEA R Documentation
GSEA with clusterProfiler
Description
GSEA with clusterProfiler
Usage
runGSEA(
data,
genesets = NULL,
rank_by = "stat",
rank_type = "",
id_col = NULL,
direction_by = NULL,
min_size = 3,
max_size = 2000,
seed = 0,
as.df = TRUE,
...
)
Arguments
...
Examples
data.frame(id = rgenes(n = 100), stat = rnorm(100)) |> col2rownames() |> runGSEA(genesets = getMSigDB(collections = "H"))
AlexanderKirchmair/datamisc documentation built on June 13, 2025, 5:26 a.m.
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| runGSEA | R Documentation |
GSEA with clusterProfiler
Description
GSEA with clusterProfiler
Usage
runGSEA(
data,
genesets = NULL,
rank_by = "stat",
rank_type = "",
id_col = NULL,
direction_by = NULL,
min_size = 3,
max_size = 2000,
seed = 0,
as.df = TRUE,
...
)
Arguments
... |
Examples
data.frame(id = rgenes(n = 100), stat = rnorm(100)) |> col2rownames() |> runGSEA(genesets = getMSigDB(collections = "H"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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