runGSVA: Single-sample gene set enrichment with GSVA

In AlexanderKirchmair/datamisc: Various functions for data handling

Single-sample gene set enrichment with GSVA

Description

Single-sample gene set enrichment with GSVA

Usage

runGSVA(
  data,
  genesets,
  method = "gsva",
  kcdf = "Gaussian",
  min_size = 1,
  max_size = Inf,
  assay = NA_character_,
  annotation = NULL,
  params = NULL,
  ncores = 1,
  ...
)

Arguments

data	Expression data
genesets	Genesets
...

Examples

data <- getTestData()$data
genesets = getMSigDB("H")
rownames(data) <- sample(unique(unlist(genesets)), nrow(data))
runGSVA(data, genesets)

AlexanderKirchmair/datamisc documentation built on June 13, 2025, 5:26 a.m.