DrawContigCumulLength: DrawContigCumulLength Function (SeQual)

In AlexisHardy/DNAModAnnot: Toolbox for DNA Modifications filtering and annotation

DrawContigCumulLength Function (SeQual)

Description

Return a line-plot describing the cumulative length of contigs (ordered from largest to smallest contig).

Usage

DrawContigCumulLength(
  nContigCumsumLength,
  cOrgAssemblyName,
  lGridInBackground = FALSE,
  cLineColor = "red",
  nLineWidth = 2,
  nLineType = 1
)

Arguments

nContigCumsumLength	A numeric vector containing the cumulative length of contigs (ordered from largest to smallest contig).
cOrgAssemblyName	The name of the genome assembly corresponding to these contigs.
lGridInBackground	If TRUE, add a grid in the background. Defaults to FALSE.
cLineColor	The color of the line. Defaults to "red".
nLineWidth	The width of the line. Defaults to 2.
nLineType	The type of the line. Defaults to 1.

Examples

myGenome <- Biostrings::readDNAStringSet(system.file(
  package = "DNAModAnnot", "extdata",
  "ptetraurelia_mac_51_sca171819.fa"
))

myContig_cumul_len_t <- GetContigCumulLength(dnastringsetGenome = myGenome)

DrawContigCumulLength(
  nContigCumsumLength = myContig_cumul_len_t$cumsum_Mbp_length,
  cOrgAssemblyName = "ptetraurelia_mac_51"
)

AlexisHardy/DNAModAnnot documentation built on Feb. 27, 2023, 12:03 a.m.