dot-GetCumsumTableParamByMotif: GetCumsumTableParamByMotif Function (FDREst)
In AlexisHardy/DNAModAnnot: Toolbox for DNA Modifications filtering and annotation

.GetCumsumTableParamByMotif

R Documentation

GetCumsumTableParamByMotif Function (FDREst)

Return a dataframe with cumulative number of values of the parameter provided in the GRanges object (from highest to lowest values).

.GetCumsumTableParamByMotif(
  grangesDataWithSeq,
  cNameParamToTest,
  nRoundDigits = 1,
  lTestBetweenMotifs = FALSE
)

`grangesDataWithSeq`	A GRanges-like object containing, in the extra columns, the parameter to be tested and the sequence.
`cNameParamToTest`	The name of the column containing the parameter to be tested.
`nRoundDigits`	The number of digits for the thresholds on the parameter. A value of 0 would mean no value to be rounded: this could results in errors for a continuous variable. Defaults to 1.
`lTestBetweenMotifs`	If TRUE, add one column for each sequence in the GRanges object provided. Else, calculates the cumulative number of values of the parameter provided independantly of the sequence associated. Defaults to FALSE.