GetGenomeGRanges: GetGenomeGRanges Function (DaLoad)
In AlexisHardy/DNAModAnnot: Toolbox for DNA Modifications filtering and annotation
GetGenomeGRanges R Documentation
GetGenomeGRanges Function (DaLoad)
Description
Return a GRanges object from a DNAStringSet object with ranges from 1 to the sequences width (for both strands).
Usage
GetGenomeGRanges(dnastringsetGenome)
Arguments
dnastringsetGenome
A DNAStringSet object to convert as a GRanges object.
If sequences have no names, these will be named with "seq" and a number
(corresponding to the order in the DNAStringSet object) in the GRanges object.
Examples
mySeqs <- Biostrings::DNAStringSet(c("ACCATTGATTAT", "AATATCGACTA", "GACTAT"))
myRanges <- GetGenomeGRanges(mySeqs)
myRanges
AlexisHardy/DNAModAnnot documentation built on Feb. 27, 2023, 12:03 a.m.
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| GetGenomeGRanges | R Documentation |
GetGenomeGRanges Function (DaLoad)
Description
Return a GRanges object from a DNAStringSet object with ranges from 1 to the sequences width (for both strands).
Usage
GetGenomeGRanges(dnastringsetGenome)
Arguments
dnastringsetGenome |
A DNAStringSet object to convert as a GRanges object. If sequences have no names, these will be named with "seq" and a number (corresponding to the order in the DNAStringSet object) in the GRanges object. |
Examples
mySeqs <- Biostrings::DNAStringSet(c("ACCATTGATTAT", "AATATCGACTA", "GACTAT"))
myRanges <- GetGenomeGRanges(mySeqs)
myRanges
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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