mash_plot_effects: ggplot of single mash effect

In Alice-MacQueen/switchgrassGWAS: Genome Wide Association on Panicum virgatum

Description

Creates a plot with point estimates and standard errors for effects of a single SNP in multiple conditions.

Usage

mash_plot_effects(
  m,
  n = NA,
  i = NA,
  marker = TRUE,
  saveoutput = FALSE,
  suffix = ""
)

Arguments

m	An object of type mash
n	Optional. Integer or integer vector. The result number to plot, in order of significance. 1 would be the top result, for example. Find these with get_significant_results.
i	Optional. Integer or integer vector. The result number to plot, in the order of the mash object. 1 would be the first marker in the mash object, for example. Find these with get_marker_df.
marker	Optional. Print the marker name on the plot?
saveoutput	Logical. Should the output be saved to the path?
suffix	Character. Optional. A unique suffix used to save the files, instead of the current date & time.

Note

Specify only one of n or i.

Alice-MacQueen/switchgrassGWAS documentation built on Jan. 23, 2022, 7:55 p.m.