pvdiv_bigsnp2tibble: Convert A 'FBM.code256' SNP subset to a dataframe.
In Alice-MacQueen/switchgrassGWAS: Genome Wide Association on Panicum virgatum
Description
Usage
Arguments
Value
Note
View source: R/pvdiv_gwas_results.R
Description
This function creates a dataframe of SNP calls for a
FBM.code256 object. We recommend that this be a dataframe for a small
region.
Usage
1
pvdiv_bigsnp2tibble(snp)
Arguments
snp
A FBM.code256 object. Genomic information for Panicum virgatum.
SNP data is available at doi:10.18738/T8/ET9UAU
Value
A tbl_df() of the SNP calls for all individuals for the
subset of SNPs on that chromosome between the two positions specified.
Note
bigsnpr already has functions to subset its SNP file format and return
a bed file and to return its own SNP file format. This function is useful
if you instead want a small(ish) dataframe of SNPs that can be
manipulated using data frame tools in R.
Alice-MacQueen/switchgrassGWAS documentation built on Jan. 23, 2022, 7:55 p.m.
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Description Usage Arguments Value Note
View source: R/pvdiv_gwas_results.R
Description
This function creates a dataframe of SNP calls for a
FBM.code256 object. We recommend that this be a dataframe for a small
region.
Usage
1 | pvdiv_bigsnp2tibble(snp)
|
Arguments
snp |
A |
Value
A tbl_df() of the SNP calls for all individuals for the
subset of SNPs on that chromosome between the two positions specified.
Note
bigsnpr already has functions to subset its SNP file format and return a bed file and to return its own SNP file format. This function is useful if you instead want a small(ish) dataframe of SNPs that can be manipulated using data frame tools in R.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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