get_de_matrix: Generate a matrix of pairwise DE results

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Generate a matrix of pairwise DE results

Description

Generate a matrix of pairwise DE results

Usage

get_de_matrix(de.genes, directed = FALSE, field = "num")

Arguments

de.genes	Output from de_score or de_stats_all_pairs.
directed	Logical indicating whether to select results based on all DE genes (Default, FALSE) or up/down regulated genes (see Details).
field	The result to retrieve from de.results. Either "score" or "num". Default is "num".

Details

When directed = TRUE and field = "num", the minimum value from up or down-regulated genes is returned for each pair. When field = "score", the minimum deScore is returned.

Value

a matrix with clusters as rows and columns, and pairwise DE results as values.

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.