heatmap.4: Title

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Title

Description

Title

Usage

heatmap.4(
  x,
  Rowv = TRUE,
  Colv = if (symm) "Rowv" else TRUE,
  distfun = dist,
  hclustfun = hclust,
  dendrogram = c("both", "row", "column", "none"),
  symm = FALSE,
  scale = c("none", "row", "column"),
  na.rm = TRUE,
  revC = identical(Colv, "Rowv"),
  add.expr,
  breaks,
  symbreaks = min(x < 0, na.rm = TRUE) || scale != "none",
  col = "heat.colors",
  colsep,
  rowsep,
  sepcolor = "white",
  sepwidth = c(0.05, 0.05),
  cellnote,
  notecex = 1,
  notecol = "cyan",
  na.color = par("bg"),
  trace = c("column", "row", "both", "none"),
  tracecol = "cyan",
  hline = median(breaks),
  vline = median(breaks),
  linecol = tracecol,
  margins = c(5, 5),
  ColSideColors,
  RowSideColors,
  cexRow = 0.2 + 1/log10(nr),
  cexCol = 0.2 + 1/log10(nc),
  labRow = NULL,
  labCol = NULL,
  key = TRUE,
  keysize = 1,
  density.info = c("histogram", "density", "none"),
  denscol = tracecol,
  symkey = min(x < 0, na.rm = TRUE) || symbreaks,
  densadj = 0.25,
  main = NULL,
  xlab = NULL,
  ylab = NULL,
  lmat = NULL,
  lhei = 0.01,
  lwid = NULL,
  ...
)

Arguments

x
Rowv
Colv
distfun
hclustfun
dendrogram
symm
scale
na.rm
revC
add.expr
breaks
symbreaks
col
colsep
rowsep
sepcolor
sepwidth
cellnote
notecex
notecol
na.color
trace
tracecol
hline
vline
linecol
margins
ColSideColors
RowSideColors
cexRow
cexCol
labRow
labCol
key
keysize
density.info
denscol
symkey
densadj
main
xlab
ylab
lmat
lhei
lwid
...

AllenInstitute/scrattch.hicat documentation built on June 6, 2024, 5:31 a.m.