jaccard_leiden: Perform Jaccard/Leiden clustering

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Perform Jaccard/Leiden clustering

Description

Perform Jaccard/Leiden clustering

Usage

jaccard_leiden(
  dat,
  k = 10,
  weight = NULL,
  num_iter = 2,
  resolution_parameter = 1e-04,
  random_seed = NULL,
  verbose = FALSE,
  ...
)

Arguments

dat	A matrix of samples (rows) x features (columns)
k	K nearest neighbors to use
num_iter	If n_iter < 0 the optimiser continues iterating until it encounters an iteration that did not improve the partition.

Value

A list object with the cluster factor object and (cl) and Jaccard/Leiden results (result)

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.