knn_joint: knn joint

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

knn joint

Description

knn joint

Usage

knn_joint(
  comb.dat,
  ref.sets = names(comb.dat$dat.list),
  select.sets = names(comb.dat$dat.list),
  merge.sets = ref.sets,
  select.cells = comb.dat$all.cells,
  select.genes = NULL,
  method = "cor",
  self.method = "RANN",
  k = 15,
  sample.size = 5000,
  cl.sample.size = 100,
  batch.size = 10000,
  verbose = TRUE,
  mc.cores = 1,
  ...
)

Arguments

comb.dat
ref.sets
select.sets
merge.sets
select.cells
select.genes
method
self.method
k
sample.size
cl.sample.size
batch.size
verbose
mc.cores
...

AllenInstitute/scrattch.hicat documentation built on June 6, 2024, 5:31 a.m.