logCPM: Convert a matrix of raw counts to a matrix of log2(Counts per...
In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data
logCPM R Documentation
Convert a matrix of raw counts to a matrix of log2(Counts per Million + 1) values
Description
The input can be a base R matrix or a sparse matrix from the Matrix package.
Usage
logCPM(counts)
Arguments
counts
a matrix, dgCMatrix, or dgTMatrix of count values.
Details
This function expects that columns correspond to samples, and rows to genes.
Value
a matrix, dgCMatrix, or dgTMatrix of log2(CPM + 1) values (matching input)
AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.
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| logCPM | R Documentation |
Convert a matrix of raw counts to a matrix of log2(Counts per Million + 1) values
Description
The input can be a base R matrix or a sparse matrix from the Matrix package.
Usage
logCPM(counts)
Arguments
counts |
a matrix, dgCMatrix, or dgTMatrix of count values. |
Details
This function expects that columns correspond to samples, and rows to genes.
Value
a matrix, dgCMatrix, or dgTMatrix of log2(CPM + 1) values (matching input)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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