map_cl_summary: Map a dataset to a reference, and compare existing cluster...

Description Usage Arguments Value

View source: R/annotate.R

Description

Map a dataset to a reference, and compare existing cluster calls to the reference comparison

Usage

1
map_cl_summary(ref.dat, ref.cl, map.dat, map.cl)

Arguments

ref.dat

Training data matrix, usually log-transformed CPM

ref.cl

Training cluster factor object

map.dat

Data for cells to map to the training set. Should have the same genes as train.dat.

map.cl

Cluster assignments for the training set to compare to results of mapping.

Value

a list object with two objects:


AllenInstitute/scrattch.hicat documentation built on Nov. 6, 2018, 9:47 p.m.