map_cv: Run a single round of cross-validation of cluster mapping...

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Run a single round of cross-validation of cluster mapping using a subset of marker genes

Description

Run a single round of cross-validation of cluster mapping using a subset of marker genes

Usage

map_cv(
  norm.dat,
  cl,
  markers,
  n.bin = 5,
  g.perc = 1,
  method = "median",
  verbose = TRUE
)

Arguments

norm.dat	a normalized data matrix for clustered cells
cl	a cluster factor object for the cells in norm.dat
markers	a character object with the marker genes to use for cross-validation
n.bin	an integer indicating the number of bins to use
g.perc	the fraction of genes to use for validation.
method	Method for mapping. Must be either "median" (Default) or "mean".
verbose	Whether or not to display progress notifications.

Value

a named character object with the results of one round of cross-validation

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.