match_cl: Compute correlations of clusters to a reference set, and get...

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Compute correlations of clusters to a reference set, and get the best-correlated reference clusters

Description

match_cl uses pearson correlation of cluster means.

Usage

match_cl(cl, dat, ref.cl, ref.cl.df, ref.dat, rename = TRUE)

Arguments

cl	A cluster factor object to compare to a reference
dat	a normalized data matrix for data to map to the reference
ref.cl	A cluster factor object for the reference clusters
ref.cl.df	A data.frame with reference cluster annotations that includes a "cluster_label" column
ref.dat	a reference normalized data matrix
rename	a logical indicating whether or not to rename the results. #' @return a list with 3 objects: cl cl.df cor

AllenInstitute/scrattch.hicat documentation built on June 6, 2024, 5:31 a.m.