plot_low_qc: Plot low-quality clusters

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Plot low-quality clusters

Description

Plot low-quality clusters

Usage

plot_low_qc(norm.dat, cl, low.df, nn.df, de.genes, all.col)

Arguments

cl	A cluster factor object for all cells.
low.df	a data.frame with results from find_low_quality_cl().
nn.df
de.genes	differential gene expression results like those generated by de_score().
all.col
norm.data	normalized data matrix for clustered cells.

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.