predict_annotate_cor: Predict annotations by cluster correlation

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Predict annotations by cluster correlation

Description

This function performs map_by_cor(), then compare_annotate().

Usage

predict_annotate_cor(
  cl,
  norm.dat,
  ref.markers,
  ref.cl,
  ref.cl.df,
  ref.norm.dat,
  method = "median",
  reorder = TRUE
)

Arguments

cl	a cluster factor object for data to map to the reference
norm.dat	a normalized data matrix for data to map to the reference
ref.markers	a set of reference marker genes
ref.cl	a reference cluster factor object
ref.cl.df	a reference cl.df data.frame that describes the reference clusters
ref.norm.dat	a reference normalized data matrix
method	"median" or "mean". Default is "median".
reorder	Whether or not to reorder the input clusters based on the reference.

Value

a list object with annotation results

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.