select_joint_genes: Select joint genes

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Select joint genes

Description

Select joint genes

Usage

select_joint_genes(
  comb.dat,
  ref.list,
  select.cells = comb.dat$all.cells,
  maxGenes = 2000,
  vg.padj.th = 0.5,
  max.dim = 20,
  use.markers = TRUE,
  top.n = 100,
  rm.eigen = NULL,
  rm.th = rep(0.7, ncol(rm.eigen))
)

Arguments

comb.dat
ref.list
select.cells
maxGenes
vg.padj.th
max.dim
use.markers
top.n
rm.eigen
rm.th

AllenInstitute/scrattch.hicat documentation built on June 6, 2024, 5:31 a.m.