Files in AllenInstitute/scrattch.io
scrattch File Input/Output Handling
.Rbuildignore
.gitignore
.travis.yml
CONTRIBUTION
DESCRIPTION
LICENSE
NAMESPACE
R/annotation.R
R/feather_to_hdf5.R
R/global.R
R/hdf5.R
R/large_matrix.R
R/misc.R
R/read_10x.R
R/read_feather.R
R/read_geo.R
R/read_h5ad.R
R/read_loom.R
R/read_shelf.R
R/read_tome.R
R/read_tome_lowlevel.R
R/write_10x.R
R/write_csv.R
R/write_feather.R
R/write_tome.R
R/write_tome_lowlevel.R
README.md
inst/testdata/build_data.R
inst/testdata/feather/anno.feather
inst/testdata/feather/data.feather
inst/testdata/feather/desc.feather
inst/testdata/hicat/tasic16_cl.RData
inst/testdata/hicat/tasic16_cl.df.RData
inst/testdata/loom/Sympathetic.loom
inst/testdata/rds/anno.RData
inst/testdata/rds/data.RData
inst/testdata/rds/data_dgCMatrix.RData
inst/testdata/rds/dend.RData
inst/testdata/rds/desc.RData
inst/testdata/tome/transcrip.tome
man/annotate_cat.Rd
man/annotate_factor.Rd
man/annotate_num.Rd
man/auto_annotate.Rd
man/build_feather.Rd
man/check_tome_existence.Rd
man/cl_to_anno.Rd
man/collapse_along.Rd
man/create_desc.Rd
man/feather_to_list.Rd
man/flip_table.Rd
man/get_feather_data.Rd
man/group_annotations.Rd
man/jagged_to_data.frame.Rd
man/jagged_to_dgCMatrix.Rd
man/jagged_to_matrix.Rd
man/large_matrix_to_dgCMatrix.Rd
man/read_10x_dgCMatrix.Rd
man/read_gene_data_hdf5.Rd
man/read_h5ad_dgCMatrix.Rd
man/read_loom_anno.Rd
man/read_loom_dgCMatrix.Rd
man/read_loom_projections.Rd
man/read_shelf_gene_data.Rd
man/read_shelf_sample_data.Rd
man/read_tome_anno.Rd
man/read_tome_anno_desc.Rd
man/read_tome_data.frame.Rd
man/read_tome_data_dims.Rd
man/read_tome_dend.Rd
man/read_tome_dend_desc.Rd
man/read_tome_dgCMatrix.Rd
man/read_tome_exon_lengths.Rd
man/read_tome_gene_data.Rd
man/read_tome_gene_meta.Rd
man/read_tome_gene_meta_desc.Rd
man/read_tome_gene_names.Rd
man/read_tome_genes_jagged.Rd
man/read_tome_intron_lengths.Rd
man/read_tome_mapping.Rd
man/read_tome_mapping_desc.Rd
man/read_tome_projection.Rd
man/read_tome_projection_desc.Rd
man/read_tome_sample_data.Rd
man/read_tome_sample_names.Rd
man/read_tome_samples_jagged.Rd
man/read_tome_serialized.Rd
man/read_tome_stats.Rd
man/read_tome_stats_desc.Rd
man/read_tome_total_counts.Rd
man/read_tome_vector.Rd
man/save_sparse_matrix_h5.Rd
man/set_scrattch.io_global_overwrite.Rd
man/set_scrattch.io_global_verbosity.Rd
man/values_to_colors.Rd
man/varibow.Rd
man/write_dgCMatrix_csv.Rd
man/write_dgCMatrix_h5.Rd
man/write_tome_anno.Rd
man/write_tome_anno_desc.Rd
man/write_tome_data.Rd
man/write_tome_data.frame.Rd
man/write_tome_dend.Rd
man/write_tome_dend_desc.Rd
man/write_tome_dgCMatrix.Rd
man/write_tome_exon_lengths.Rd
man/write_tome_gene_meta.Rd
man/write_tome_gene_meta_desc.Rd
man/write_tome_group.Rd
man/write_tome_intron_lengths.Rd
man/write_tome_mapping.Rd
man/write_tome_projection.Rd
man/write_tome_projection_desc.Rd
man/write_tome_serialized.Rd
man/write_tome_sifter_stats.Rd
man/write_tome_stats.Rd
man/write_tome_stats_desc.Rd
man/write_tome_vector.Rd
misc/benchmarking.R
scrattch.io.Rproj
tests/testthat.R
tests/testthat/test-annotation.R
tests/testthat/test-loom.R
tests/testthat/test-tome.R
tome_structure.txt
