read_gene_data_hdf5: Read Gene Expression Data from an HDF5 file
In AllenInstitute/scrattch.io: scrattch File Input/Output Handling
Description
Usage
Arguments
Value
Description
Read Gene Expression Data from an HDF5 file
Usage
1
read_gene_data_hdf5(hdf5_file, genes, type = c("counts", "cpm"))
Arguments
hdf5_file
HDF5 file to read
genes
A vector of gene names to read
type
Whether to return "counts" or normalize to "cpm". Default is "counts".
Value
A data.frame with sample_id as the first column and each subsequent column
containing gene expression values and named for the genes.
AllenInstitute/scrattch.io documentation built on Nov. 17, 2021, 10:06 a.m.
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Description Usage Arguments Value
Description
Read Gene Expression Data from an HDF5 file
Usage
1 | read_gene_data_hdf5(hdf5_file, genes, type = c("counts", "cpm"))
|
Arguments
hdf5_file |
HDF5 file to read |
genes |
A vector of gene names to read |
type |
Whether to return "counts" or normalize to "cpm". Default is "counts". |
Value
A data.frame with sample_id as the first column and each subsequent column containing gene expression values and named for the genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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