cl_to_anno: Convert a cl factor object to an annotation data.frame

In AllenInstitute/scrattch.io: scrattch File Input/Output Handling

Description

Convert a cl factor object to an annotation data.frame

Usage

cl_to_anno(cl, cl.df = NULL, cl_col = "cl", base = "cluster")

Arguments

cl	The cl factor object generated by clustering with scrattch.hicat
cl.df	Optional: A cluster annotation data.frame.
cl_col	The column to use to match cl.df to cl. Default is "cl", but if not found, will try to match using rownames(cl.df).
base	The base of the cluster annotation. Default is "cluster", which will result in "cluster_id","cluster_label", and "cluster_color" columns.

Value

a data.frame with columns "sample_name", base"_id", base"_label", and base"_color"

AllenInstitute/scrattch.io documentation built on Nov. 17, 2021, 10:06 a.m.