API for AnnikaGable/chromium
Analyze and visualize high throughput chromatin interaction data, such as Hi-C or ChIA-PET
| Global functions | |
|---|---|
| .Change.Point | Source code |
| .find_pits | Source code |
| .get_bin_idx | Source code |
| .get_posthoc_pvalue | Source code |
| .get_signal | Source code |
| .my_logit | Source code |
| Create_any_resolution_LFM | Man page Source code |
| IPF_alg | Man page Source code |
| Iset_region_to_LFM | Man page Source code |
| Iset_to_LFM | Man page Source code |
| LFM_to_Iset | Man page Source code |
| RFpair_to_pairID | Man page Source code |
| RFpairs_to_Iset | Man page Source code |
| bin_chrom | Man page Source code |
| chr2 | Man page |
| domain_calling_TopDom | Source code |
| easy_Iset_to_LFM | Man page Source code |
| import_chrom | Man page Source code |
| loss_function | Man page Source code |
| normalize_LFM_iteratively | Man page Source code |
| normalize_chrom | Man page Source code |
| pairID_to_RFpair | Man page Source code |
| plot_qa | Man page Source code |
| quality_assessment | Man page Source code |
| read_bed_raf | Man page Source code |
| rotated_image | Man page Source code |
| subset_chrom | Man page Source code |
| subset_interactions | Man page Source code |
| sym_to_triangle | Man page Source code |
| triangle_to_sym | Man page Source code |
| visualize_chrom | Man page Source code |
