Iset_to_LFM: Convert an InteractionSet object into a ligation frequency...

Description Usage Arguments Value Examples

View source: R/conversion.R

Description

The data can be binned or not binned, normalized or not normalized.

Usage

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Arguments

Iset

An InteractionSet object

Value

A list consisting of: the sparse ligation frequency matrix with the genomic annotation as rownames and colnames, the restriction fragment annotation (or bin annotation), and the restriction fragment pairs (or bin pairs).

Examples

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LFM <- Matrix::Matrix(c(1,2,1,2,5,0,1,0,0), 3, sparse = T)
Iset <- LFM_to_Iset(LFM, binned = F)
LFM_back <- Iset_to_LFM(Iset)[[1]]
LFM == LFM_back

AnnikaGable/chromium documentation built on July 12, 2018, 4 p.m.