Iset_to_LFM: Convert an InteractionSet object into a ligation frequency...
In AnnikaGable/chromium: Analyze and visualize high throughput chromatin interaction data, such as Hi-C or ChIA-PET
Description
Usage
Arguments
Value
Examples
Description
The data can be binned or not binned, normalized or not normalized.
Usage
1
Iset_to_LFM(Iset)
Arguments
Iset
An InteractionSet object
Value
A list consisting of: the sparse ligation frequency matrix with the genomic annotation as rownames and colnames,
the restriction fragment annotation (or bin annotation), and the restriction fragment pairs (or bin pairs).
Examples
1
2
3
4
LFM <- Matrix::Matrix(c(1,2,1,2,5,0,1,0,0), 3, sparse = T)
Iset <- LFM_to_Iset(LFM, binned = F)
LFM_back <- Iset_to_LFM(Iset)[[1]]
LFM == LFM_back
AnnikaGable/chromium documentation built on May 5, 2019, 6:04 a.m.
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Description Usage Arguments Value Examples
Description
The data can be binned or not binned, normalized or not normalized.
Usage
1 | Iset_to_LFM(Iset)
|
Arguments
Iset |
An InteractionSet object |
Value
A list consisting of: the sparse ligation frequency matrix with the genomic annotation as rownames and colnames, the restriction fragment annotation (or bin annotation), and the restriction fragment pairs (or bin pairs).
Examples
1 2 3 4 | LFM <- Matrix::Matrix(c(1,2,1,2,5,0,1,0,0), 3, sparse = T)
Iset <- LFM_to_Iset(LFM, binned = F)
LFM_back <- Iset_to_LFM(Iset)[[1]]
LFM == LFM_back
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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