LFM_to_Iset: Convert a sparse ligation frequency matrix into an...
In AnnikaGable/chromium: Analyze and visualize high throughput chromatin interaction data, such as Hi-C or ChIA-PET
Description
Usage
Arguments
Value
Examples
Description
The data can be binned or not binned, normalized or not normalized.
Usage
1
LFM_to_Iset(LFM, binned = F)
Arguments
LFM
A sparse ligation frequency matrix, with the genomic annotation as row and column names.
binned
Boolean, whether the matrix is already binned. Defaults to TRUE.
Value
An interaction set object containing the information from the LFM and the genomic annotation,
and with the binSize stored as metadata
Examples
1
2
LFM <- Matrix::Matrix(c(1,2,1,2,5,0,1,0,0), 3, sparse = T)
Iset <- LFM_to_Iset(LFM, binned = F)
AnnikaGable/chromium documentation built on May 5, 2019, 6:04 a.m.
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Description Usage Arguments Value Examples
Description
The data can be binned or not binned, normalized or not normalized.
Usage
1 | LFM_to_Iset(LFM, binned = F)
|
Arguments
LFM |
A sparse ligation frequency matrix, with the genomic annotation as row and column names. |
binned |
Boolean, whether the matrix is already binned. Defaults to TRUE. |
Value
An interaction set object containing the information from the LFM and the genomic annotation, and with the binSize stored as metadata
Examples
1 2 | LFM <- Matrix::Matrix(c(1,2,1,2,5,0,1,0,0), 3, sparse = T)
Iset <- LFM_to_Iset(LFM, binned = F)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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