subset_chrom: Choose a chromosome and a region within which InteractionSet...

In AnnikaGable/chromium: Analyze and visualize high throughput chromatin interaction data, such as Hi-C or ChIA-PET

Description

Only those interactions and regions of an InteractionSet which lie within the specified range will be retained. This is useful to reduce the object size of the InteractionSet.

Usage

subset_chrom(Iset, chr, from = NULL, to = NULL)

Arguments

Iset	The InteractionSet object to be subsetted.
chr	The chromosome for which interactions and regions should be retained.
from	Optional. The starting point of the interactions and regions to be retained. If NULL, the chromosome beginning is selected.
to	Optional. The ending point of the interactions and regions to be retained. If NULL, the chromosome end is selected.

Value

An InteractionSet containing only those regions and those interactions specified in the arguments.

Examples

# chr2_Iset <- subset_chrom(Iset, chr = 2)

AnnikaGable/chromium documentation built on May 5, 2019, 6:04 a.m.