Files in AnnikaGable/chromium
Analyze and visualize high throughput chromatin interaction data, such as Hi-C or ChIA-PET
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/binning.R
R/conversion.R
R/data.R
R/domain_calling.R
R/import_and_subset.R
R/normalization.R
R/quality_assessment.R
R/visualization.R
README.md
RFannoRFpairsList.rds
chromium.Rproj
data-raw/make_example.R
data/chr2.rda
data/exampleIset.rda
data/exampleLFM.rda
inst/extdata/3colsRFpairs.raf
inst/extdata/RFanno_HindIII.bed
inst/extdata/characterRFpairs.raf
inst/extdata/chr2.raf
inst/extdata/exRFanno.bed
inst/extdata/exRFpairs.raf
inst/extdata/largeRFpairs.raf
inst/extdata/missingRFpairs.raf
inst/extdata/save_geneModels.R
man/Create_any_resolution_LFM.Rd
man/IPF_alg.Rd
man/Iset_region_to_LFM.Rd
man/Iset_to_LFM.Rd
man/LFM_to_Iset.Rd
man/RFpair_to_pairID.Rd
man/RFpairs_to_Iset.Rd
man/bin_chrom.Rd
man/chr2.Rd
man/easy_Iset_to_LFM.Rd
man/import_chrom.Rd
man/loss_function.Rd
man/normalize_LFM_iteratively.Rd
man/normalize_chrom.Rd
man/pairID_to_RFpair.Rd
man/plot_qa.Rd
man/quality_assessment.Rd
man/read_bed_raf.Rd
man/rotated_image.Rd
man/subset_chrom.Rd
man/subset_interactions.Rd
man/sym_to_triangle.Rd
man/triangle_to_sym.Rd
man/visualize_chrom.Rd
missingRFpairs.raf
tests/.DS_Store
tests/testthat.R
tests/testthat/test_LFM_conversion.R
tests/testthat/test_import.R
tests/testthat/test_visualization.R
vignettes/chromium.Rmd
