plot_qa: Output a quality assessment report.

Description Usage Arguments Examples

View source: R/quality_assessment.R

Description

Outputs a PDF with number of ligation products (treated as interactions), number of inter- and intrachromosomal interactions, and plots of distances between interactions and the loss function of normalization (if data are normalized).

Usage

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plot_qa(qa, outDir = getwd(), reportName = "Quality_report.pdf")

Arguments

qa

The list from the quality_assessment() function.

outDir

The directory where the quality report should be created.

reportName

File name of the output PDF file

Examples

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qa <- list(interactionCount = 100,
interchromosomal = 3,
intrachromosomal = 97,
contactDistances = sample(1:225, 100))

plot_qa(qa, reportName = "My_qality_report.pdf")

AnnikaGable/chromium documentation built on May 5, 2019, 6:04 a.m.