API for AntonelliLab/gaius
Divide and Conquer Phylogenetic Supermatrices and Supertrees in R
| Global functions | |
|---|---|
| .alignment_read | Man page Source code |
| .onAttach | Source code |
| .sequences_write | Man page Source code |
| align | Man page Source code |
| alignment | Man page |
| alignment_info_get | Source code |
| alignment_list | Man page |
| alignment_read | Man page Source code |
| astral | Source code |
| backbone_sequences_select | Source code |
| cat_line | Source code |
| char | Source code |
| datadir_get | Source code |
| default_pget | Man page Source code |
| default_pset | Man page Source code |
| drop_tips | Man page Source code |
| elem | Source code |
| format_guess | Man page Source code |
| func | Source code |
| gaius | Man page |
| gaius-package | Man page |
| gapmatrix_get | Man page Source code |
| group_search | Source code |
| groups_get | Source code |
| mafft | Source code |
| msar_wrapper | Man page Source code |
| name_match | Source code |
| names_from_alignments | Source code |
| names_from_tree | Source code |
| nms_from_fasta | Man page Source code |
| obj | Source code |
| outsider_install | Source code |
| parameters | Man page |
| partition_file | Man page Source code |
| pasta | Source code |
| pget | Man page Source code |
| phylo | Man page Source code |
| pmissing | Source code |
| pmissing.gapmatrix | Man page Source code |
| print.alignment | Source code |
| print.alignment_info | Source code |
| print.alignment_list | Source code |
| print.groups | Source code |
| print.matched_names | Source code |
| print.supermatrices | Source code |
| print.supermatrix | Source code |
| pset | Man page Source code |
| ptype_match | Source code |
| raxml | Source code |
| sequences_filter | Man page Source code |
| sequences_select | Man page Source code |
| sequences_write | Man page Source code |
| sift | Man page Source code |
| sift.supermatrices | Man page Source code |
| sq | Source code |
| stat | Source code |
| supermatrices | Man page |
| supermatrices_get | Man page Source code |
| supermatrix | Man page |
| supermatrix_get | Man page Source code |
| supertree | Man page Source code |
| viz | Man page Source code |
| viz.alignment | Man page Source code |
| viz.supermatrix | Man page Source code |
