Files in AntonelliLab/gaius
Divide and Conquer Phylogenetic Supermatrices and Supertrees in R
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/align.R
R/console.R
R/gaius.R
R/grouping.R
R/mafft.R
R/matrix.R
R/misc.R
R/outsider.R
R/parameters.R
R/phylo.R
R/print-methods.R
R/raxml.R
R/read-write.R
R/supertree.R
R/test.R
R/viz.R
README.md
data/alignment.rda
data/alignment_list.rda
data/supermatrices.rda
data/supermatrix.rda
demos/aotus/coii.fasta
demos/aotus/coii_mafft_alignment.fasta
demos/aotus/cytb.fasta
demos/aotus/cytb_mafft_alignment.fasta
demos/aotus/sry.fasta
demos/aotus/sry_mafft_alignment.fasta
demos/aotus/tree.tre
dev.R
logo.png
man/align.Rd
man/alignment.Rd
man/alignment_list.Rd
man/alignment_read.Rd
man/dot-alignment_read.Rd
man/dot-sequences_write.Rd
man/drop_tips.Rd
man/format_guess.Rd
man/gaius.Rd
man/gapmatrix_get.Rd
man/msar_wrapper.Rd
man/nms_from_fasta.Rd
man/parameters.Rd
man/partition_file.Rd
man/phylo.Rd
man/sequences_filter.Rd
man/sequences_select.Rd
man/sequences_write.Rd
man/supermatrices.Rd
man/supermatrices_get.Rd
man/supermatrix.Rd
man/supermatrix_get.Rd
man/supertree.Rd
man/viz.Rd
other/aotus_test.R
other/data_maker.R
other/dev.R
other/example_run.R
other/outline.png
tests/test-all.R
tests/testthat/data/alignment.fasta
tests/testthat/data/alignments/1.fasta
tests/testthat/data/alignments/10.fasta
tests/testthat/data/alignments/2.fasta
tests/testthat/data/alignments/3.fasta
tests/testthat/data/alignments/4.fasta
tests/testthat/data/alignments/5.fasta
tests/testthat/data/alignments/6.fasta
tests/testthat/data/alignments/7.fasta
tests/testthat/data/alignments/8.fasta
tests/testthat/data/alignments/9.fasta
tests/testthat/data/supermatrix.rda
tests/testthat/test-console.R
tests/testthat/test-matrix.R
tests/testthat/test-parameters.R
tests/testthat/test-print-methods.R
tests/testthat/test-read-write.R
tests/testthat/test-test.R
