align | Generate alignments from sequences |
alignment | Example alignment |
alignment_list | Example alignment_list |
alignment_read | Read in sequence alignment(s) |
dot-alignment_read | Read alignments |
dot-sequences_write | Write sequences |
drop_tips | Drop tips from a supermatrix |
format_guess | Guess the sequence file format |
gaius | gaius: Divide and conquer phylogenetic super -matrices and... |
gapmatrix_get | Generate a gaps matrix |
msar_wrapper | Visualise sequences |
nms_from_fasta | Read tip labels from sequence file |
parameters | Set and get parameters |
partition_file | Generate partition file for RAxML |
phylo | Generate phylogenies from supermatrices |
sequences_filter | Filter sequecnes from alignments |
sequences_select | Select sequences from alignments |
sequences_write | Write sequences to file |
supermatrices | Example supermatrices |
supermatrices_get | Create supermatrices from list of alignments and groups... |
supermatrix | Example supermatrix |
supermatrix_get | Convert list of alignments into a supermatrix |
supertree | Create supertree |
viz | Visualise an alignment or supermatrix |
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