sequences_filter: Filter sequecnes from alignments
In AntonelliLab/gaius: Divide and Conquer Phylogenetic Supermatrices and Supertrees in R
Description
Usage
Arguments
Value
Description
Return a filtered alignment. Columns will be dropped
that have fewer proportion of non-gaps then cutoff and genes will be dropped
that are less than min_nbps long.
Usage
1
sequences_filter(alignment_list, cutoff = 0.9, min_nbps = 200)
Arguments
alignment_list
alignment list object
cutoff
Proportion of non-gaps
min_nbps
Minimum sequence length
Value
alignment_list
AntonelliLab/gaius documentation built on June 17, 2020, 8:07 a.m.
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Description Usage Arguments Value
Description
Return a filtered alignment. Columns will be dropped that have fewer proportion of non-gaps then cutoff and genes will be dropped that are less than min_nbps long.
Usage
1 | sequences_filter(alignment_list, cutoff = 0.9, min_nbps = 200)
|
Arguments
alignment_list |
alignment list object |
cutoff |
Proportion of non-gaps |
min_nbps |
Minimum sequence length |
Value
alignment_list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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