Man pages for AntonelliLab/gaius
Divide and Conquer Phylogenetic Supermatrices and Supertrees in R
| align | Generate alignments from sequences |
| alignment | Example alignment |
| alignment_list | Example alignment_list |
| alignment_read | Read in sequence alignment(s) |
| dot-alignment_read | Read alignments |
| dot-sequences_write | Write sequences |
| drop_tips | Drop tips from a supermatrix |
| format_guess | Guess the sequence file format |
| gaius | gaius: Divide and conquer phylogenetic super -matrices and... |
| gapmatrix_get | Generate a gaps matrix |
| msar_wrapper | Visualise sequences |
| nms_from_fasta | Read tip labels from sequence file |
| parameters | Set and get parameters |
| partition_file | Generate partition file for RAxML |
| phylo | Generate phylogenies from supermatrices |
| sequences_filter | Filter sequecnes from alignments |
| sequences_select | Select sequences from alignments |
| sequences_write | Write sequences to file |
| supermatrices | Example supermatrices |
| supermatrices_get | Create supermatrices from list of alignments and groups... |
| supermatrix | Example supermatrix |
| supermatrix_get | Convert list of alignments into a supermatrix |
| supertree | Create supertree |
| viz | Visualise an alignment or supermatrix |
