Man pages for AntonioDeFalco/SCEVAN
SCEVAN
| annotateGenes | annotateGenes Annotate genes with genomic coordinates with... |
| annoteBandOncoHeat | annoteBandOncoHeat Annotate with chromosome bands the data... |
| classifyCluster | classifyCluster Classify the two major clusters of CNA matrix... |
| classifyTumorCells | classifyTumorCells Classify tumour and normal cells from the... |
| computeCNAmtx | computeCNAmtx computed the CNA matrix using the break points... |
| getBreaksVegaMC | getBreaksVegaMC Get SCEVAN segmentation of the matrix. |
| getConfidentNormalCells | getConfidentNormalCells Get at most top 30 confident normal... |
| multiSampleComparisonClonalCN | multiSampleComparisonClonalCN Compare the clonal Copy Number... |
| pipelineCNA | pipelineCNA Executes the entire SCEVAN pipeline that... |
| plotAllClonalCN | Title plotAllClonalCN |
| plotAllSubclonalCN | plotAllSubclonalCN Plot the copy number of each subclone of a... |
| plotCNA_withAnnotCells | plotCNA_withAnnotCells allows generating a heatmap of the... |
| removeSyntheticBaseline | removeSyntheticBaseline Removes a synthetic baseline from a... |
| SCEVAN | SCEVAN: R package that automatically classifies the cells in... |
| sortData | This function sorts a dataset file by the genomic position of... |
| top30classification | Get at most top 30 confident normal cells |
