API for AntonioDeFalco/SCEVAN
SCEVAN
| Global functions | |
|---|---|
| EM | Source code |
| EStep | Source code |
| MStep | Source code |
| NESclassification | Source code |
| addInterval | Source code |
| analyzeSegm | Source code |
| analyzeSegm2 | Source code |
| annotateGenes | Man page Source code |
| annoteBandOncoHeat | Source code |
| classifyCluster | Man page Source code |
| classifyTumorCells | Man page Source code |
| computeCNAmtx | Man page Source code |
| computeF1score | Source code |
| createHTML | Source code |
| diffSubclones | Source code |
| diffSubclones2 | Source code |
| genesDE | Source code |
| getBreaksVegaMC | Source code |
| getCNcall | Source code |
| getCallingCN | Source code |
| getClonalCNProfile | Source code |
| getConditionalProbabilities | Source code |
| getConfidentNormalCells | Man page Source code |
| getCorrelationCN | Source code |
| getExtractSegm | Source code |
| getExtractSegm_old | Source code |
| getGenes | Source code |
| getInitParameters | Source code |
| getLabelCall | Source code |
| getModifyPosSeg | Source code |
| getPossibleSpecAltFromSeg | Source code |
| getPossibleSpecAltFromSeg2 | Source code |
| getPosteriorProbability | Source code |
| getScevanCNV | Source code |
| getScevanCNVfinal | Source code |
| getTruncatedGaussianDensity | Source code |
| heatmap.3 | Source code |
| heatmapConsensusPlot | Source code |
| modifyNameCNV | Source code |
| modifyPOS | Source code |
| modifySEG | Source code |
| multiSampleComparisonClonalCN | Source code |
| pathwayAnalysis | Source code |
| pipelineCNA | Man page Source code |
| plotAllClonalCN | Source code |
| plotAllSubclonalCN | Source code |
| plotCN | Source code |
| plotCNA | Source code |
| plotCNAline | Source code |
| plotCNAlineOnlyTumor | Source code |
| plotCNclonal | Source code |
| plotCNclonal_old | Source code |
| plotCNsubclones | Source code |
| plotCloneTree | Source code |
| plotCloneTreeNew | Source code |
| plotConsensusCNA | Source code |
| plotOncoHeat | Source code |
| plotOncoHeat2 | Source code |
| plotOncoHeatSubclones | Source code |
| plotSegmentation | Source code |
| plotSubclones | Source code |
| plotTSNE | Source code |
| preprocessingMtx | Source code |
| qvalue | Source code |
| removeSyntheticBaseline | Man page Source code |
| segmPos | Source code |
| segmPosSpec | Source code |
| segmTumorMatrix | Source code |
| sortData | Man page Source code |
| ssMwwGst | Source code |
| subcloneAnalysisPipeline | Source code |
| subclonesTumorCells | Source code |
| testSpecificAlteration | Source code |
| testSpecificSubclonesAlteration | Source code |
| top30classification | Man page Source code |
| vegaMC_R | Source code |
