API for AntonioDeFalco/SCEVAN
SCEVAN

Global functions
DEBUGpipelineCNA Source code
DEBUGsubclonesAnalysis Source code
NESclassification Source code
ReSegmSubclones Source code
addInterval Source code
analyzeSegm Source code
annotateGenes Man page Source code
annoteBandOncoHeat Source code
classifyCluster Man page Source code
classifyTumorCells Man page Source code
compareClonalStructure Source code
computeCNAmtx Man page Source code
computeF1score Source code
createHTML Source code
diffSubclones Source code
genesDE Source code
getBreaksVegaMC Source code
getClonalCNProfile Source code
getConfidentNormalCells Man page Source code
getCorrelationCN Source code
getGenes Source code
getModifyPosSeg Source code
getPossibleSpecAltFromSeg Source code
getScevanCNV Source code
heatmap.3 Source code
heatmapConsensusPlot Source code
modifyPOS Source code
modifySEG Source code
pathwayAnalysis Source code
pipelineCNA Man page Source code
plotCN Source code
plotCNA Source code
plotCNAline Source code
plotCNAlineOnlyTumor Source code
plotCNclonal Source code
plotCNsubclones Source code
plotCloneTree Source code
plotOncoHeat Source code
plotOncoHeatSubclones Source code
plotSegmentation Source code
plotSubclones Source code
plotTSNE Source code
preprocessingMtx Source code
qvalue Source code
removeSyntheticBaseline Man page Source code
segmPos Source code
segmPosSpec Source code
segmTumorMatrix Source code
sortData Man page Source code
ssMwwGst Source code
subcloneAnalysisPipeline Source code
subclonesTumorCells Man page Source code
testSpecificAlteration Source code
testSpecificSubclonesAlteration Source code
top30classification Man page Source code
vegaMC_R Source code
AntonioDeFalco/SCEVAN documentation built on June 23, 2022, 11:08 a.m.