dot-clean_and_check_cols: Checks genomic input file columns to ensure column names are...
In AxelitoMartin/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
.clean_and_check_cols R Documentation
Checks genomic input file columns to ensure column names are correct
Description
Checks genomic input file columns to ensure column names are correct
Usage
.clean_and_check_cols(
df_to_check,
required_cols = c("sample_id", "hugo_symbol")
)
Arguments
df_to_check
Raw maf dataframe containing alteration data
required_cols
A character specifying names of columns to check
Value
a corrected maf file or an error if problems with maf
Examples
gnomeR:::.clean_and_check_cols(df_to_check = gnomeR::mutations)
AxelitoMartin/gnomeR documentation built on Oct. 18, 2024, 11:39 a.m.
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| .clean_and_check_cols | R Documentation |
Checks genomic input file columns to ensure column names are correct
Description
Checks genomic input file columns to ensure column names are correct
Usage
.clean_and_check_cols(
df_to_check,
required_cols = c("sample_id", "hugo_symbol")
)
Arguments
df_to_check |
Raw maf dataframe containing alteration data |
required_cols |
A character specifying names of columns to check |
Value
a corrected maf file or an error if problems with maf
Examples
gnomeR:::.clean_and_check_cols(df_to_check = gnomeR::mutations)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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