names_df: Data Frame of Column Names
In AxelitoMartin/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
names_df R Documentation
Data Frame of Column Names
Description
Data frame of accepted data names for standard genomic files. This serves as a
dictionary to help disambiguate raw column names from user entered mutation,
CNA or structural variant data
Usage
names_df
Format
A data frame
- maf_column_name
data field names as they appear in common MAF file
- api_column_name
data field names as they appear in common cBioPortal API retrieved files
- mutation_input
does this field appear in mutation files?
- fusion_input
does this field appear in mutation/sv files?
- cna_input
does this field appear in CNA files?
- definition
variable definition
- notes
data notes
- sc_maf_column_name
snake case version of maf_column_name
- sc_api_column_name
snake case version of api_column_name
- internal_column_name
name used for each field for all internal processing functions
AxelitoMartin/gnomeR documentation built on March 23, 2024, 3:07 a.m.
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| names_df | R Documentation |
Data Frame of Column Names
Description
Data frame of accepted data names for standard genomic files. This serves as a dictionary to help disambiguate raw column names from user entered mutation, CNA or structural variant data
Usage
names_df
Format
A data frame
- maf_column_name
data field names as they appear in common MAF file
- api_column_name
data field names as they appear in common cBioPortal API retrieved files
- mutation_input
does this field appear in mutation files?
- fusion_input
does this field appear in mutation/sv files?
- cna_input
does this field appear in CNA files?
- definition
variable definition
- notes
data notes
- sc_maf_column_name
snake case version of
maf_column_name- sc_api_column_name
snake case version of
api_column_name- internal_column_name
name used for each field for all internal processing functions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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