example.count: kimma example count table.
In BIGslu/kimma: Kinship In Mixed Model Analysis of RNA-seq

example.count

R Documentation

kimma example count table.

Description

A limma EList data set containing normalized log2 RNA-seq counts. RNA-seq of human dendritic cells cultured with and without virus. Samples from 3 donors and a random subset of 1000 genes were selected. Counts are TMM normalized log2 counts per million (CPM).

Usage

example.count

Format

A data frame with 1000 rows and 13 columns

geneName: character. ENSEMBL gene ID.
lib1: numeric. Raw counts in library 1.
lib2: numeric. Raw counts in library 2.
lib3: numeric. Raw counts in library 3.
lib4: numeric. Raw counts in library 4.
lib5: numeric. Raw counts in library 5.
lib6: numeric. Raw counts in library 6.
lib7: numeric. Raw counts in library 7.
lib8: numeric. Raw counts in library 8.
lib9: numeric. Raw counts in library 9.
lib10: numeric. Raw counts in library 10.
lib11: numeric. Raw counts in library 11.
lib12: numeric. Raw counts in library 12.

Source

https://github.com/altman-lab/P259_pDC_public

References

Dill-McFarland et al. 2022 Eosinophil-mediated suppression and Anti-IL-5 enhancement of plasmacytoid dendritic cell interferon responses in asthma. J Allergy Clin Immunol. 150(3):666-675. doi: 10.1016/j.jaci.2022.03.025

BIGslu/kimma documentation built on May 30, 2024, 10:09 p.m.