kimma_lmerel: Run kimma linear mixed effects model with kinship

In BIGslu/kimma: Kinship In Mixed Model Analysis of RNA-seq

Run kimma linear mixed effects model with kinship

Description

Run kimma linear mixed effects model with kinship

Usage

kimma_lmerel(
  model_lme,
  to_model_gene,
  gene,
  kin_subset,
  use_weights,
  patientID,
  metrics
)

Arguments

model_lme	Character model created in kmFit
to_model_gene	Data frame formatted in kmFit, subset to gene of interest
gene	Character of gene to model
kin_subset	Pairwise kinship matrix
use_weights	Logical if gene specific weights should be used in model. Default is FALSE
patientID	Character of variable name to match dat$targets to kinship row and column names.
metrics	Logical if should calculate model fit metrics such as AIC, BIC, R-squared. Default is FALSE

Value

Linear mixed effect with kinship results data frame for 1 gene

BIGslu/kimma documentation built on May 30, 2024, 10:09 p.m.