kmFit_contrast: Run pairwise model comparisons with emmeans

In BIGslu/kimma: Kinship In Mixed Model Analysis of RNA-seq

Run pairwise model comparisons with emmeans

Description

Run pairwise model comparisons with emmeans

Usage

kmFit_contrast(fit, contrast_var, to_model_gene, genotype_name)

Arguments

fit	model fit from lm( ) or lmer( )
contrast_var	Character vector of variable in model to run contrasts of
to_model_gene	Formatted data from kimma_cleaning( ), subset to gene of interest
genotype_name	Character string. Used internally for kmFit_eQTL

Value

data frame with contrast model results

BIGslu/kimma documentation built on May 30, 2024, 10:09 p.m.