tronco.bootstrap: tronco bootstrap

In BIMIB-DISCo/TRONCO: TRONCO, an R package for TRanslational ONCOlogy

tronco bootstrap

Description

Bootstrap a reconstructed progression model. For details and examples regarding the statistical assesment of an inferred model, we refer to the Vignette Section 7.

Usage

tronco.bootstrap(
  reconstruction,
  type = "non-parametric",
  nboot = 100,
  cores.ratio = 1,
  silent = FALSE
)

Arguments

reconstruction	The output of tronco.capri or tronco.caprese
type	Parameter to define the type of sampling to be performed, e.g., non-parametric for uniform sampling.
nboot	Number of bootstrap sampling to be performed when estimating the model confidence.
cores.ratio	Percentage of cores to use coresRate * (numCores - 1)
silent	A parameter to disable/enable verbose messages.

Value

A TRONCO compliant object with reconstructed model

Examples

data(test_model)
boot = tronco.bootstrap(test_model, nboot = 1, cores.ratio = 0)

BIMIB-DISCo/TRONCO documentation built on Nov. 5, 2024, 3:44 a.m.