tronco.caprese: tronco caprese

In BIMIB-DISCo/TRONCO: TRONCO, an R package for TRanslational ONCOlogy

tronco caprese

Description

Reconstruct a progression model using CAPRESE algorithm. For details and examples regarding the inference process and on the algorithm implemented in the package, we refer to the Vignette Section 6.

Usage

tronco.caprese(data, lambda = 0.5, silent = FALSE, epos = 0, eneg = 0)

Arguments

data	A TRONCO compliant dataset.
lambda	Coefficient to combine the raw estimate with a correction factor into a shrinkage estimator.
silent	A parameter to disable/enable verbose messages.
epos	Error rate of false positive errors.
eneg	Error rate of false negative errors.

Value

A TRONCO compliant object with reconstructed model

Examples

data(test_dataset_no_hypos)
recon = tronco.caprese(test_dataset_no_hypos)

BIMIB-DISCo/TRONCO documentation built on Nov. 5, 2024, 3:44 a.m.