Files in BIMSBbioinfo/AmpliconBiSeq
analyzing amplicon bisulfite sequencing data
.Rbuildignore
.gitignore
AmpliconBiSeq.Rproj
DESCRIPTION
NAMESPACE
NEWS
R/AmpliconViews_class.R
R/AmpliconViews_function.R
R/designPrimers.R
R/plotAmpliconView.R
R/spikeCheck.R
README.md
data/ampViewEx.RData
data/ampdat.RData
data/bisPrimers.RData
data/datalist
inst/lib/x86_64/default_settings.txt
inst/lib/x86_64/primer3_config/dangle.dh
inst/lib/x86_64/primer3_config/dangle.ds
inst/lib/x86_64/primer3_config/interpretations/dangle_i.dh
inst/lib/x86_64/primer3_config/interpretations/dangle_i.ds
inst/lib/x86_64/primer3_config/interpretations/loops_i.dh
inst/lib/x86_64/primer3_config/interpretations/loops_i.ds
inst/lib/x86_64/primer3_config/interpretations/stack_i.dh
inst/lib/x86_64/primer3_config/interpretations/stack_i.ds
inst/lib/x86_64/primer3_config/interpretations/stackmm_i_mm.dh
inst/lib/x86_64/primer3_config/interpretations/stackmm_i_mm.ds
inst/lib/x86_64/primer3_config/interpretations/tetraloop_i.dh
inst/lib/x86_64/primer3_config/interpretations/tetraloop_i.ds
inst/lib/x86_64/primer3_config/interpretations/triloop_i.dh
inst/lib/x86_64/primer3_config/interpretations/triloop_i.ds
inst/lib/x86_64/primer3_config/interpretations/tstack2_i.dh
inst/lib/x86_64/primer3_config/interpretations/tstack2_i.ds
inst/lib/x86_64/primer3_config/interpretations/tstack_i.dh
inst/lib/x86_64/primer3_config/interpretations/tstack_i.ds
inst/lib/x86_64/primer3_config/interpretations/tstack_tm_inf_i.dh
inst/lib/x86_64/primer3_config/interpretations/tstack_tm_inf_i.ds
inst/lib/x86_64/primer3_config/loops.dh
inst/lib/x86_64/primer3_config/loops.ds
inst/lib/x86_64/primer3_config/stack.dh
inst/lib/x86_64/primer3_config/stack.ds
inst/lib/x86_64/primer3_config/stackmm.dh
inst/lib/x86_64/primer3_config/stackmm.ds
inst/lib/x86_64/primer3_config/tetraloop.dh
inst/lib/x86_64/primer3_config/tetraloop.ds
inst/lib/x86_64/primer3_config/triloop.dh
inst/lib/x86_64/primer3_config/triloop.ds
inst/lib/x86_64/primer3_config/tstack.dh
inst/lib/x86_64/primer3_config/tstack2.dh
inst/lib/x86_64/primer3_config/tstack2.ds
inst/lib/x86_64/primer3_config/tstack_tm_inf.ds
inst/lib/x86_64/primer3_core
man/AmpliconViews-class.Rd
man/AmpliconViews.Rd
man/ampData.Rd
man/designPrimers.Rd
man/filterPrimers.Rd
man/getAmplicon.Rd
man/getAmpliconNames.Rd
man/getAmpliconRanges.Rd
man/getAvMeth.Rd
man/getCoverage.Rd
man/getExampleMethMat.Rd
man/getMetaMethylation.Rd
man/getMethMat.Rd
man/getSampleNames.Rd
man/getSimilarity.Rd
man/methRatio.Rd
man/plotAmpliconView.Rd
man/primers2ranges.Rd
man/show-methods.Rd
man/spikeCheck.Rd
vignettes/AmpliconBiSeq-concordance.tex
vignettes/AmpliconBiSeq.Rnw
vignettes/AmpliconBiSeq.log
vignettes/AmpliconBiSeq.pdf
vignettes/AmpliconBiSeq.tex
vignettes/AmpliconBiSeq.toc
vignettes/figure/manual-MetaGenerate.pdf
vignettes/figure/manual-metaImplant.pdf
vignettes/figure/manual-metaReveal.pdf
vignettes/figure/manual-plotAmp.pdf
vignettes/figure/manual-spikeCheck1.pdf
