AmpliconViews-class: An S4 class for amplicon bisulfite sequencing
In BIMSBbioinfo/AmpliconBiSeq: analyzing amplicon bisulfite sequencing data

Description Slots Details Constructor Subsetting Accessors Examples

This class is designed to hold methylat ion statistics and locations for targeted amplicons from a amplicon bisulfite sequencing experiment . AmpliconViews function returns an object of AmpliconViews class.

sampleNames: Names of samples in a vector
amplicons: GRanges object for locations of the amplicons
data: list structure holding the information on amplicons

AmpliconViews class is desingned to contain amplicon information such as methylation, coverage, meta-patterns and similarities between CpG profiles.

see AmpliconViews

an AmpliconViews object containing multiple amplicons and samples can be subsetted using getAmplicon function.

The following functions provides access to data slots of methylDiff: getSamples,getAmpliconRanges, getAmplicon, getMetaMethylation