primers2ranges: convert primer list to genomic intervals

In BIMSBbioinfo/AmpliconBiSeq: analyzing amplicon bisulfite sequencing data

Description

function returns a GRanges or data frame object from a list of primers designed by designPrimers function after calculating genomic location of the amplicon targeted by the primers.

Usage

primers2ranges(primers, as.data.frame = FALSE)

Arguments

primers	a list of primers returned by designPrimers function
as.data.frame	logical indicating if a data frame should be returned instead of GRanges object.

See Also

filterPrimers, designPrimers

Examples

data(bisPrimers)
 gr.pr=primers2ranges(bisPrimers)

BIMSBbioinfo/AmpliconBiSeq documentation built on May 5, 2019, 10:25 a.m.