API for BIMSBbioinfo/RCAS
RNA Centric Annotation System
| Global functions | |
|---|---|
| calculateCoverageProfile | Man page |
| calculateCoverageProfileFromTxdb | Man page |
| calculateCoverageProfileList | Man page |
| calculateCoverageProfileListFromTxdb | Man page |
| checkSeqDb | Man page Source code |
| countPattern | Source code |
| createControlRegions | Man page |
| createDB | Man page Source code |
| createOrthologousGeneSetList | Man page Source code |
| deleteSampleDataFromDB | Man page Source code |
| discoverFeatureSpecificMotifs | Man page Source code |
| extractMatches | Source code |
| extractSequences | Man page |
| findDifferentialMotifs | Man page Source code |
| findEnrichedFunctions | Man page Source code |
| generateKmers | Man page Source code |
| getFeatureBoundaryCoverage | Man page |
| getFeatureBoundaryCoverageBin | Man page |
| getFeatureBoundaryCoverageMulti | Man page Source code |
| getIntervalOverlapMatrix | Man page Source code |
| getMotifSummaryTable | Man page Source code |
| getPWM | Man page Source code |
| getTargetedGenesTable | Man page |
| getTxdbFeatures | Man page |
| getTxdbFeaturesFromGRanges | Man page |
| gff | Man page |
| importBed | Man page |
| importBedFiles | Man page Source code |
| importGtf | Man page |
| insertTableAnnotationSummaries | Source code |
| insertTableBedData | Source code |
| insertTableDiscoveredMotifs | Source code |
| insertTableFeatureBoundaryCoverageProfiles | Source code |
| insertTableGtfData | Source code |
| insertTableOverlapMatrix | Source code |
| parseMsigdb | Man page Source code |
| plotFeatureBoundaryCoverage | Man page |
| printMsigdbDataset | Man page Source code |
| processHits | Source code |
| queryGff | Man page Source code |
| queryRegions | Man page |
| retrieveOrthologs | Man page Source code |
| runGSEA | Man page |
| runMotifDiscovery | Man page |
| runMotifRG | Man page Source code |
| runReport | Man page Source code |
| runReportMetaAnalysis | Man page Source code |
| runTopGO | Man page |
| summarizeDatabaseContent | Man page Source code |
| summarizeQueryRegions | Man page Source code |
| summarizeQueryRegionsMulti | Man page Source code |
| validateProjDataFile | Source code |
