BIMSBbioinfo/genomation: Summary, annotation and visualization of genomic data

A package for summary and annotation of genomic intervals. Users can visualize and quantify genomic intervals over pre-defined functional regions, such as promoters, exons, introns, etc. The genomic intervals represent regions with a defined chromosome position, which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

Getting started

Package details

AuthorAltuna Akalin [aut, cre], Vedran Franke [aut, cre], Katarzyna Wreczycka [aut], Alexander Gosdschan [ctb], Liz Ing-Simmons [ctb], Bozena Mika-Gospodorz [ctb]
Bioconductor views Annotation CpGIsland Sequencing Visualization
MaintainerAltuna Akalin <>, Vedran Franke <>, Katarzyna Wreczycka <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
BIMSBbioinfo/genomation documentation built on March 13, 2020, 5:28 a.m.