convertBedDf-methods: convert a data frame read-in from a bed file to a GRanges...

Description Usage Arguments Value Note

Description

convert a data frame read-in from a bed file to a GRanges object

Usage

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convertBedDf(bed)

## S4 method for signature 'data.frame'
convertBedDf(bed)

Arguments

bed

a data.frame where column order and content resembles a bed file with 12 columns

Value

GRanges object

Note

one bed track per file is only accepted, the bed files with multiple tracks will cause en error

bed files are expected not to have header lines


BIMSBbioinfo/genomation documentation built on Feb. 4, 2018, 12:11 p.m.